[INFO] fetching crate fg-mako 0.1.1...
[INFO] testing fg-mako-0.1.1 against master#cced03bfd61a304243a34504618ecec86c17063f for pr-154065-2
[INFO] extracting crate fg-mako 0.1.1 into /workspace/builds/worker-3-tc1/source
[INFO] removed /workspace/builds/worker-3-tc1/source/.cargo/config.toml
[INFO] removed /workspace/builds/worker-3-tc1/source/rust-toolchain.toml
[INFO] started tweaking crates.io crate fg-mako 0.1.1
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate fg-mako 0.1.1
[INFO] tweaked toml for crates.io crate fg-mako 0.1.1 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate fg-mako 0.1.1 on toolchain cced03bfd61a304243a34504618ecec86c17063f
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate fg-mako 0.1.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-csi v0.54.0
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[INFO] [stderr]   Downloaded noodles-sam v0.82.0
[INFO] [stderr]   Downloaded safe_arch v1.0.0
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[INFO] [stderr]   Downloaded wide v1.4.0
[INFO] [stderr]   Downloaded libdeflate-sys v1.25.2
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] ef148cd8c8935b03de208a6918a2b141502fd8a2ecc60950ddac81cb5161fcdf
[INFO] running `Command { std: "docker" "start" "ef148cd8c8935b03de208a6918a2b141502fd8a2ecc60950ddac81cb5161fcdf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ef148cd8c8935b03de208a6918a2b141502fd8a2ecc60950ddac81cb5161fcdf" "/opt/rustwide/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ef148cd8c8935b03de208a6918a2b141502fd8a2ecc60950ddac81cb5161fcdf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ef148cd8c8935b03de208a6918a2b141502fd8a2ecc60950ddac81cb5161fcdf" "/opt/rustwide/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
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[INFO] [stderr]    Compiling built v0.8.1
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[INFO] [stderr]    Compiling fg-mako v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 24s
[INFO] running `Command { std: "docker" "inspect" "ef148cd8c8935b03de208a6918a2b141502fd8a2ecc60950ddac81cb5161fcdf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ef148cd8c8935b03de208a6918a2b141502fd8a2ecc60950ddac81cb5161fcdf" "/opt/rustwide/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling predicates-core v1.0.10
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[INFO] [stderr]    Compiling predicates v3.1.4
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[INFO] [stderr]    Compiling noodles-core v0.19.0
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[INFO] [stderr]    Compiling noodles-fasta v0.60.0
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[INFO] [stderr]    Compiling noodles-vcf v0.84.0
[INFO] [stderr]    Compiling noodles-bam v0.86.0
[INFO] [stderr]    Compiling noodles v0.106.0
[INFO] [stderr]    Compiling fgumi-raw-bam v0.2.0
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[INFO] [stderr]    Compiling fgumi-metrics v0.2.0
[INFO] [stderr]    Compiling fgumi-consensus v0.2.0
[INFO] [stderr]    Compiling fgumi v0.2.0
[INFO] [stderr]    Compiling fg-mako v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 37.76s
[INFO] running `Command { std: "docker" "inspect" "ef148cd8c8935b03de208a6918a2b141502fd8a2ecc60950ddac81cb5161fcdf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ef148cd8c8935b03de208a6918a2b141502fd8a2ecc60950ddac81cb5161fcdf" "/opt/rustwide/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.45s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/mako-c685a71bdd0e0335)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli.rs (/opt/rustwide/target/debug/deps/cli-32f4832bcf005191)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test help_prints_flat_sort_options ... ok
[INFO] [stdout] test version_includes_fgumi_attribution ... ok
[INFO] [stdout] test coordinate_sort_orders_records_by_position ... ok
[INFO] [stdout] test verify_passes_on_sorted_input ... ok
[INFO] [stdout] test verbose_flag_enables_info_logs ... ok
[INFO] [stdout] test queryname_sort_orders_records_lexicographically ... ok
[INFO] [stdout] test nonexistent_input_exits_nonzero ... ok
[INFO] [stderr] Error: BAM file is NOT correctly sorted by Coordinate: 1 violations found
[INFO] [stderr] 
[INFO] [stderr] Stack backtrace:
[INFO] [stderr]    0: <anyhow::Error>::msg::<alloc::string::String>
[INFO] [stderr]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.102/src/backtrace.rs:10:14
[INFO] [stderr]    1: <fgumi_lib::commands::sort::Sort>::execute_verify
[INFO] [stderr]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/fgumi-0.2.0/src/lib/commands/sort.rs:729:13
[INFO] [stderr]    2: <fgumi_lib::commands::sort::Sort as fgumi_lib::commands::command::Command>::execute
[INFO] [stderr]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/fgumi-0.2.0/src/lib/commands/sort.rs:428:25
[INFO] [stderr]    3: mako::main
[INFO] [stderr]              at ./src/main.rs:71:14
[INFO] [stderr]    4: <fn() -> core::result::Result<(), anyhow::Error> as core::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/core/src/ops/function.rs:250:5
[INFO] [stderr]    5: std::sys::backtrace::__rust_begin_short_backtrace::<fn() -> core::result::Result<(), anyhow::Error>, core::result::Result<(), anyhow::Error>>
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/std/src/sys/backtrace.rs:166:18
[INFO] [stderr]    6: std::rt::lang_start::<core::result::Result<(), anyhow::Error>>::{closure#0}
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/std/src/rt.rs:206:18
[INFO] [stderr]    7: <&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync as core::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/core/src/ops/function.rs:287:21
[INFO] [stderr]    8: std::panicking::catch_unwind::do_call::<&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync, i32>
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/std/src/panicking.rs:581:40
[INFO] [stderr]    9: std::panicking::catch_unwind::<i32, &dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync>
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/std/src/panicking.rs:544:19
[INFO] [stderr]   10: std::panic::catch_unwind::<&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync, i32>
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/std/src/panic.rs:359:14
[INFO] [stderr]   11: std::rt::lang_start_internal::{closure#0}
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/std/src/rt.rs:175:24
[INFO] [stderr]   12: std::panicking::catch_unwind::do_call::<std::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/std/src/panicking.rs:581:40
[INFO] [stderr]   13: std::panicking::catch_unwind::<isize, std::rt::lang_start_internal::{closure#0}>
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/std/src/panicking.rs:544:19
[INFO] [stderr]   14: std::panic::catch_unwind::<std::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/std/src/panic.rs:359:14
[INFO] [stderr]   15: std::rt::lang_start_internal
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/std/src/rt.rs:171:5
[INFO] [stderr]   16: std::rt::lang_start::<core::result::Result<(), anyhow::Error>>
[INFO] [stderr]              at /rustc/cced03bfd61a304243a34504618ecec86c17063f/library/std/src/rt.rs:205:5
[INFO] [stderr]   17: main
[INFO] [stderr]   18: <unknown>
[INFO] [stderr]   19: __libc_start_main
[INFO] [stderr]   20: _start
[INFO] [stdout] test verify_fails_on_unsorted_input ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.40s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "ef148cd8c8935b03de208a6918a2b141502fd8a2ecc60950ddac81cb5161fcdf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ef148cd8c8935b03de208a6918a2b141502fd8a2ecc60950ddac81cb5161fcdf", kill_on_drop: false }`
[INFO] [stdout] ef148cd8c8935b03de208a6918a2b141502fd8a2ecc60950ddac81cb5161fcdf
